-
WPGMA (Weighted Pair
Group Method with
Arithmetic Mean) is a
simple agglomerative (bottom-up)
hierarchical clustering method,
generally attributed to...
- (bottom-up)
hierarchical clustering method. It also has a
weighted variant,
WPGMA, and they are
generally attributed to
Sokal and Michener. Note that the...
-
include complete linkage clustering,
average linkage clustering (UPGMA and
WPGMA), and Ward's method. In the
naive algorithm for
agglomerative clustering...
-
clustering Molecular clock Neighbor-joining Single-linkage
clustering UPGMA WPGMA Sorensen T (1948). "A
method of
establishing groups of
equal amplitude in...
- subtrees. The
UPGMA (Unweighted Pair
Group Method with
Arithmetic mean) and
WPGMA (Weighted Pair
Group Method with
Arithmetic mean)
methods produce rooted...
- lineages. The
UPGMA (Unweighted Pair
Group Method with
Arithmetic mean) and
WPGMA (Weighted Pair
Group Method with
Arithmetic mean)
methods produce rooted...
- and a
distance d are: Some of
these can only be
recomputed recursively (
WPGMA, WPGMC), for many a
recursive com****tion with Lance-Williams-equations...
-
reconstruct the true tree with high probability.
Compared with
UPGMA and
WPGMA,
neighbor joining has the
advantage that it does not ****ume all lineages...
- construction,
ultrametric distances are also
utilized by the
UPGMA and
WPGMA methods.
These algorithms require a constant-rate ****umption and produce...
-
complete linkage clustering (the
maximum of
object distances), and
UPGMA or
WPGMA ("Unweighted or
Weighted Pair
Group Method with
Arithmetic Mean", also known...
