-
families found in
Bacteria and Archaea. Like Pfam,
TIGRFAMs uses the
HMMER package written by Sean Eddy.
TIGRFAMs was
produced originally at The
Institute for...
- CATH-Gene3D, CDD, HAMAP, MobiDB, PANTHER, Pfam, SMART, SUPERFAMILY, SFLD,
TIGRFAMs,
classifies proteins into
families and
predicts the
presence of domains...
-
specific sequence-structure
features to
specific chemical capabilities.
TIGRFAMs TIGRFAMs is a
collection of
protein families,
featuring curated multiple sequence...
-
system of the
bacterium Francisella novicida. Its
original name, from a
TIGRFAMs protein family definition built in 2012,
reflects the
prevalence of its...
- SwissProt, and the
Protein Data Bank, and HMM
databases such as Pfam,
TIGRFAMs and SUPERFAMILY. The four
search types phmmer, hmmsearch,
hmmscan and jackhmmer...
-
model (HMM) for its
detection were
provided in 2012 in a
release of the
TIGRFAMs database of
protein families. Cas12a
appears in many
bacterial species...
-
imported from a
number of
external source databases (Pfam, SMART, COG, PRK,
TIGRFAMs). What is
unique about NCBI-curated
domains is that they use 3D-structure...
-
annotation was
synthesized using the
HMMer suite, OriFinder, TBLASTN, Pfam,
TIGRFam, TnpPred, Alien_Hunter, and
antiSMASH software. A
functional tunicamycin...
-
context of the
relationships between protein families and
their evolution .
TIGRFAMs and Gene3D are
referred to for
structural information and
annotation of...
