-
mapped or
locally mapped. For RNA-seq data,
Subread should be used for the
purpose of
expression analysis.
Subread can also be used to map DNA-seq reads. ZOOM...
- Bowtie,
TopHat (which
builds on
BowTie results to
align splice junctions),
Subread, STAR, HISAT2, and GMAP. The
output of
genome guided alignment (mapping)...
-
quality scores from 0 to 93 are
encoded using ASCII 33 to 126. Raw
PacBio subreads use the same
convention but
typically ****ign a
placeholder base quality...
- otherwise. No Yes Yes Yes,
OpenMP Free 2010
Subread,
Subjunc Superfast and
accurate read aligners.
Subread can be used to map both gDNA-seq and RNA-seq...
- were then
supplemented again, but
using PacBio strobe reads (multiple
subreads from a
single contiguous fragment of DNA ) to
achieve a final, high-quality...
