- RNA-
Seq (named as an
abbreviation of RNA sequencing) is a
technique that uses next-generation
sequencing to
reveal the
presence and
quantity of RNA molecules...
-
region (UTR) of mRNA molecules.
Unlike standard bulk RNA-
seq,
where short sequencing reads are
generated along the
entire length of mRNA transcripts...
- positions. The
number of
reads for a
region correlate with how open that
chromatin is, at
single nucleotide resolution. ATAC-
seq requires no sonication...
- ClustalW)
JAligner Jalview jEMBOSS (Java
EMBOSS Suite) Jmol
NJPlot Pymol ReadSEQ TreeView Weka (machine learning) Web
BLAST Web
ClustalW Web
PHYLIP Web...
- short-
read sequencing instruments. In
standard RNA-
seq, a
sequencing library must be
prepared for each RNA
sample individually. In contrast, in BRB-
seq, all...
-
automatically predict ideal primers based on a
sequence and
specified parameters ReadSeq:
converts between various sequence formats Sequence Feature Submission...
-
graphical and/or
command line
interfaces are
available [dead link], such as
READSEQ and EMBOSS.
There are also
several programming packages which provide this...
- RNA-
Seq is a
technique that
allows transcriptome studies (see also
Transcriptomics technologies)
based on next-generation
sequencing technologies. This...
- classification:
predicts the
clade of
highly pathogenic H5 HA
sequences ReadSeq:
converts between various sequence formats Data
Submission Tool: allows...
-
Sciences - BLAST, FASTA, GROMACS, Clustalw, eHITS, T-Coffee, fastDNAml,
READSEQ Examples of
types of
suitable applications included: Bio
informatics Financial...
