- as
large as
bacterial 23S rRNA: ~2,800 nts. any Yes Yes Yes
webserver RNAalifold Folds precomputed alignments using mix of free-energy and covariation...
-
RNAaliduplex Predict conserved RNA-RNA
interactions between two
alignments RNAalifold Calculate secondary structures for a set of
aligned RNA
sequences RNAcofold...
-
secondary structure was
predicted based on the
multiple alignment using RNAalifold program. The
conserved sequence motif ‘AUACAAnACCC’ was boxed. The phylogenetic...
- acid
structure prediction. The
hairpin conformation was
predicted using RNAalifold,
while the
pseudoknot was
predicted with DotKnot.
Segment 7
encodes the...
- Hofacker;
Sebastian Will;
Andreas R
Gruber &
Peter F
Stadler (2008). "
RNAalifold:
improved consensus structure prediction for RNA alignments". BMC Bioinformatics...
-
secondary structure of Smr7C and the ar7
family predicted by RNA and
RNAalifold. The
color scheme of Smr7C
represents the base
pairs probabilities. The...
- Hofacker;
Sebastian Will;
Andreas R
Gruber &
Peter F
Stadler (2008). "
RNAalifold:
improved consensus structure prediction for RNA alignments". BMC Bioinformatics...
-
Bernhart SH,
Hofacker IL, Will S,
Gruber AR,
Stadler PF (November 2008). "
RNAalifold:
improved consensus structure prediction for RNA alignments". BMC Bioinformatics...
- Hofacker;
Sebastian Will;
Andreas R Gruber;
Peter F
Stadler (2008). "
RNAalifold:
improved consensus structure prediction for RNA alignments". BMC Bioinformatics...
-
Bernhart SH,
Hofacker IL, Will S,
Gruber AR,
Stadler PF (November 2008). "
RNAalifold:
improved consensus structure prediction for RNA alignments". BMC Bioinformatics...
