- PMID 34450622.
Kozlov AM,
Darriba D,
Flouri T,
Morel B,
Stamatakis A (May 2019). "
RAxML-NG: A fast, scalable, and user-friendly tool for
maximum likelihood phylogenetic...
- for
phylogeny reconstruction will
depend on
whether a
Maximum Likelihood (
ML),
Maximum Parsimony (MP), or
Bayesian Inference (BI)
method is appropriate...
- ignored. Many
programs for
phylogenetic analyses,
including the commonly-used
RAxML and IQ-TREE programs, use the
phylip format or a
minor modification of that...
- 2016-03-11.
Stamatakis A. "
RAxML:
Randomized Axelerated Maximum Likelihood".
Retrieved 2016-03-11.
Stamatakis A (2014). "
RAxML version 8: a tool for phylogenetic...
-
treedist program in the
PHYLIP suite offers this function, as does the
RAxML_standard package, the
DendroPy Python library (under the name "symmetric...
- ProbCons,
FastAligner (region-align+auto-reference) arb-parsimony & -NJ,
RAxML, PHYML, Phylip, FastTree2,
MrBayes Edits huge
alignments and trees. Supports...
- sequences. For each P-block, an
unrooted tree
topology is
calculated using RAxML. The
program Quartet MaxCut is then used to
calculate a
supertree from these...
- 2307/2412116. ISSN 0039-7989. JSTOR 2412116.
Stamatakis A (November 2006). "
RAxML-VI-HPC:
maximum likelihood-based
phylogenetic analyses with
thousands of...
- 1093/nar/gkac278. ISSN 0305-1048. PMC 9252801. PMID 35489069. "Data S1:
RaxML file, TimeTree, and alignments". doi:10.7717/peerj.5401/supp-3. {{cite web}}:...
- all of them from the
PHYLIP package, and for the
maximum likelihood: Phy
ML,
RAxML, DNAML, DNAMLK,
PROML and PROMLK, the four
latter methods are from the...
