-
major versions of the
QIIME platform,
QIIME 1 and
QIIME 2.
While microbiome marker gene
analysis continues to be a
major focus in
QIIME 2, the developers...
-
bioinformatics tools such as ANI calculator, ContEst16S and 16S rRNA DB for
QIIME and
Mothur pipeline. MIMt is a
compact non-redundant 16S
database for a...
- PMID 8594608. "Chimera
checking sequences with
QIIME".
Quantitative Insights Into
Microbial Ecology (
QIIME).
Retrieved 2019-01-10.
Edgar R. "UCHIME algorithm"...
- been
developed for
pathogen and
microorganism aDNA
analyses in a
small (
QIIME) and
large scale (FALCON ).
Taking preventative measures in
their procedure...
- the
available information.
Tools used to
analyze the data
include VAMPS,
QIIME,
mothur and DADA2 or UNOISE3 for denoising.
Metagenomics is also used extensively...
- Widmann, Jeremy; Yatsunenko, Tanya; Zaneveld, Jesse; Knight, Rob (2010). "
QIIME allows analysis of high-throughput
community sequencing data".
Nature Methods...
- The most
frequently used
bioinformatic software include Mothur, Up****,
Qiime, Galaxy, Obitools, JAMP, Barque, and DADA2.
Comparing the
abundance of reads...
- Reproducible, interactive,
scalable and
extensible microbiome data
science using QIIME 2. doi:10.1038/s41587-019-0209-9. PMID 31341288 S2CID 198496880
Bolyen E...
- Dillon,
Matthew R.; Bolyen, Evan; Caporaso, J. Gregory; Knight, Rob (2020). "
QIIME 2
Enables Comprehensive End-to-End
Analysis of
Diverse Microbiome Data and...
- of
proteins at a 90%
identity level using the
UCLUST implementation in
QIIME. The
longest sequence within each
cluster is then
selected for
further analysis...
