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Phrap is a
widely used
program for DNA
sequence ****embly. It is part of the Phred-
Phrap-Consed package.
Phrap was
originally developed by Prof. Phil Green...
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quality scores were
primarily used by the
sequence ****embly
program Phrap.
Phrap was
routinely used in some of the
largest sequencing projects in the...
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together with
another software program called Phrap,
which is a
program for DNA
sequence ****embly.
Phrap was
routinely used in some of the
largest sequencing...
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sequence ****emblies.
Originally developed for
sequence ****emblies
created with
phrap,
recent versions also
support other sequence ****embly
programs like Newbler...
- ****emblies. ACE
files are
generated by
various ****embly programs,
including Phrap, CAP3, Newbler, Arachne, AMOS (more
specifically Minimo) and Tigr ****embler...
- coverage, and
substitution error rate.
Software compared: ABySS, Phusion2,
phrap, Velvet, SOAPdenovo, PRICE, ALLPATHS-LG N50 analysis: ****emblies by the...
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sequence data
which is done by
programs and
algorithms such as
Phred and
Phrap.
Other challenges have to deal with
repetitive sequences that
often prevent...
- Free and open-source
software portal Genome Compiler Phred base
calling Phrap Consed CodonCode Aligner MacVector UGENE Vector NTI
Bonfield JK, Whitwham...
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Thompson et al. 1994 Free, LGPL
CodonCode Aligner Multi-alignment;
ClustalW &
Phrap support Nucleotides Local or
global P.
Richterich et al. 2003 (latest version...
- in
order to
improve the
accuracy of ****emblies. Some programs, such as
Phrap or
Celera ****embler, were
designed to be used to ****emble
single genomes...
