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Inparanoid is an
algorithm that
finds orthologous genes and
paralogous genes that arose—most
likely by duplication—after some
speciation event. Such protein-coding...
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tools are
SonicParanoid and OrthoFinder.
eggNOG GreenPhylDB for
plants InParanoid focuses on
pairwise ortholog relationships OHNOLOGS is a
repository of...
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orthologous genes among multiple species. It
borrows the main idea from
InParanoid with
substantial changes to the
algorithm that
drastically reduce the...
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UniProt XML PSI XML (protein interactions,
Protein Structure Initiative)
InParanoid orthologs Ensembl Web
clients allow users to
access the data programmatically...
- or tree-based algorithms. Some
examples of graph-based
methods include InParanoid, MultiParanoid, OrthoMCL,
HomoloGene and OMA. Tree-based
algorithms include...
- CaSNP, a
database Comparative genomics Copy
number analysis Human genome Inparanoid Molecular evolution Pseudogenes Segmental duplication Tandem exon duplication...
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Paramecium tetraurelia Gene
fusion Horizontal gene
transfer Human genome Inparanoid Mobile genetic elements Molecular evolution Pseudogene Tandem exon duplication...
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segmental duplication.
Pseudogenes Molecular evolution Comparative genomics Inparanoid Tandem exon
duplication 1q21.1 copy
number variations Segmental duplication...
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refinement of
sequence homology-based ****ignments of
protein functions:
InParanoid:
Identifies eukaryotic orthologs by
looking only at in-paralogs. CDD:...
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Homology (biology)
HomoloGene Phylogenetics OrthoDB Orthologous MAtrix (OMA)
Inparanoid Ruan, J.; Li, H.; Chen, Z.; Coghlan, A.; Coin, L. J. M.; Guo, Y.; Hériché...
