-
HMMER is a free and
commonly used
software package for
sequence analysis written by Sean Eddy. Its
general usage is to
identify homologous protein or...
- LLVM-GCC and
Clang both
struggled to
compete with GCC 4.5.0 in the
timed HMMer benchmark of a Pfam
database search. LLVM-GCC and
Clang were
about 23% slower(...
-
Federal Government market.
Strand Life
Sciences TimeLogic offers DeCypher FPGA-accelerated BLAST, Smith-Waterman,
HMMER and
other sequence search tools....
- CS-BLAST, BLAT
Bowtie Clustal DECIPHER FASTA Fast
statistical alignment HMMER HH-suite
JAligner MAFFT MAVID MUSCLE Nextflow Phyloscan Probalign ProbCons...
- 2002 (GOR V)
Jpred Multiple Neural network ****ignment from PSI-BLAST and
HMMER profiles.
Predicts secondary structure and
solvent accessibility Webserver...
- (HHpred, HHsearch) free
server and
software for
protein sequence searching HMMER, a free
hidden Markov model program for
protein sequence analysis Hidden...
- simulations. The
partners of the
project included Oxford University. The
HMMER Genetic Research project made use of the
Hidden Markov model to
search for...
- seed
alignment is then used to
build a
profile hidden Markov model using HMMER. This HMM is then
searched against sequence databases, and all hits that...
- 2075, 2090, K10, K20, K20X
Single only
Available now,
version 2.2.26 GPU-
HMMER Parallelized local and
global search with
profile hidden Markov models Parallel...
- by
matching with
Hidden Markov Models is a po****r alternative, such as
HMMER. An
alternative to
BLAST for
comparing two
banks of
sequences is PLAST....
