-
Chemistry at
Harvard Macromolecular Mechanics (
CHARMM) is the name of a
widely used set of
force fields for
molecular dynamics, and the name for the molecular...
- doi:10.1021/jp993895e. ISSN 1520-6106. "scpism (c48b2) |
CHARMM". academiccharmm.org.
Retrieved 2025-03-03. An
essay on SCP-ISM
CHARMM website v t e v t e...
-
algorithms developed originally in the
scientific community,
including CHARMM, MODELLER, DELPHI, ZDOCK, DMol3 and more.
Discovery Studio provides software...
-
molecular dynamics simulation.
Using either atomistic force-fields, such as
CHARMM or GROMOS, or co****-grained
forcefields like Martini, a
single protein...
-
topology files. The
typical file
extension for a
GROMACS file is .gro. The
CHARMM molecular dynamics package can read and
write a
number of
standard chemical...
- Free
software CP2K
GROMACS LAMMPS OpenMM PLUMED Proprietary Abalone AMBER CHARMM CPMD
Desmond GROMOS NAMD...
-
parameters using available NMR data for
disordered proteins. (examples are
CHARMM 22*,
CHARMM 32,
Amber ff03* etc.) MD
simulations restrained by
experimental parameters...
- Free
software CP2K
GROMACS LAMMPS OpenMM PLUMED Proprietary Abalone AMBER CHARMM CPMD
Desmond GROMOS NAMD...
-
often performed using molecular dynamics with
force fields such as GROMOS,
CHARMM, or AMBER.
Phospholipids are
optically highly birefringent, i.e.
their refractive...
-
written using the Charm++
parallel programming model (not to be
confused with
CHARMM). It is
noted for its
parallel efficiency and is
often used to simulate...
