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BioPAX (Biological
Pathway Exchange) is a RDF/OWL-based
standard language to
represent biological pathways at the
molecular and
cellular level. Its major...
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allows SBO
terms to be
added to
Biological Pathway Exchange (
BioPAX). This
links BioPAX to
information useful for modelling,
especially by
adding quantitative...
- VCML
Archived 2006-12-09 at the
Wayback Machine, XPP, SciLab, Octave,
BioPAX and RDF/XML. The
reaction networks of
models are
presented in some graphic...
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standard formats including PDF, SBML, Neo4j GraphDB, MySQL, PSI-MITAB, and
BioPAX.
Pathway diagrams use a
Process Description (PD)
Systems Biology Graphical...
- Ontology, a
formal upper ontology designed to
support scientific research BioPAX, an
ontology for the
exchange and
interoperability of
biological pathway...
- networks.
ConsensusPathDB currently allows users to
export their models in
BioPAX format or as
image in
several formats.
Users can
search for
shortest paths...
- be
downloaded as XML (including the
standard pathway interchange format,
BioPAX). The
entire database is also
available for download.
Reactome KEGG Human...
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affect human health.
Pathway Commons is a
project and
database that uses
BioPAX language to convert,
integrate and
query other biological pathway and interaction...
- License,
Version 2.0. In
addition to
various primary data
formats (e.g. GPML,
BioPAX, Reactome, KEGG, and RDF),
WikiPathways supports a
variety of ways to integrate...
- (SBML)
Biological pathways can be
imported as
Biological Pathway Exchange (
BioPAX) to
build and
annotate models.
VCell allows users integrated access to a...
