-
known protein translations, we can only
search for them
using tBLASTn.
BLASTx BLASTx compares a
nucleotide query sequence,
which can be
translated into six...
-
sequences with a hit in
BLASTX, the
program predicts the
coding regions based on the
translation reading frames identified in
BLASTX alignments, otherwise...
- shared-host GPUs
Protein Liu Y,
Maskell DL and
Schmidt B 2009/2010
DIAMOND BLASTX and
BLASTP aligner based on
double indexing Protein Buchfink B, Xie C, Huson...
-
sequences (reads)
against the nr
protein database using BLASTx search. The
generated BLASTx output is then
taken as
input by the SOrt-ITEMS program....
-
comparison can be
performed on
translated amino acid
sequences (e.g. BLASTp, t
BLASTx) to
identify ancient duplications or on DNA
nucleotide sequences (e.g. BLASTn...
- homology-based gene
identification methods (e.g.
querying protein databases with
BLASTX). Overall, the
structure of the
model used in
GENSCAN is
similar to the...
-
classification system based on
annotation of the 5 ‘best hit’
matches in
BLASTX searches. All D.
melanogaster matches were
cataloged using FlyBase. Nearly...
-
multiple bioinformatic tools and databases.
Predominant tools included BLASTN/
BLASTX, FASTA/FASTY, DECODER, EST-WISE and HMMER,
while both
nucleic acid and protein...
- prediction: ab-initio gene
prediction using a
Hidden Markov model based method BlastX Automatic annotation transfer using BlastP Metabolic Pathway Builder integrates...
- resources, including: Rfam database, as a
reference of
known RNA
families BLASTX search tool, to
eliminate unannotated protein coding regions INFERNAL package...
